Proteome Software, Inc.
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Proteome SoftwareVersion Scaffold Q+S -Proteomics Quantitation Software

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The Scaffold Q+S software suite by Proteome Software provides a comprehensive set of tools for quantitative analysis in proteomics. It supports quantification using various labeling techniques such as iTRAQ, TMT, and SILAC, along with precursor intensity values. The platform enables the visualization of protein-level changes across samples through fold changes, intensity values, or quantitative ratios. It facilitates the comparison of independent groups, repeated measures, or time-course experiments. Proteome Software is moving towards newer platforms like Scaffold DDA, a cutting-edge quantitative platform with improved features. The company also offers solutions for core facilities and shared resource departments, addressing gaps in software pipelines and introducing new methods like DIA proteomics. Proteome Software provides technical support including tutorials via its YouTube channel, aiming to offer user-friendly solutions across various levels of expertise in proteomic research.

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A Full Suite of Tools for Labeled and Precursor Intensity Quantitation

Quantify proteins using iTRAQ, TMT, SILAC, and precursor intensity values

Visualize protein-level changes across samples using fold changes, intensity values, or quantitative ratios

Compare independent groups, repeated measures, or time-course experiments

We will be phasing out Scaffold 5/Q+S in the future. Check out Scaffold DDA for the new and improved quantitative platform