Proteome Software - Version Scaffold DIA -Versatile Software for Data-independent Acquisition

Scaffold DIA is a versatile software designed for data-independent acquisition (DIA) proteomics analysis. It stands out by enabling the analysis of raw DIA data against various data-dependent acquisition (DDA) library formats, including Prosit predictions and custom DIA-only libraries. This flexibility allows users to process data from major instrument vendors like Thermo, Sciex, and Agilent efficiently. The software supports advanced statistical analysis, featuring built-in heatmaps and principal component analysis (PCA) to track quantitative trends. Furthermore, it facilitates data sharing through the Scaffold DIA Viewer, Excel exports, and high-quality publication images. Scaffold DIA is ideal for core facilities and researchers looking for a comprehensive solution for their proteomics research, offering tools to manage software pipelines and explore new proteomics methods effectively. The software caters to users by providing an intuitive interface and comprehensive tutorials available on their YouTube channel.